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system file structure

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     Does anyone know of software that will look through the file structure and tell you what files are contiguous to what program?  There are so many files everywhere and some of the software i.e. Staad and Visual Analysis that sticks files where they see fit on installation.  You end up not knowing if you can delete.  There is software called Belarc that will tell you WHAT is installed but I would like to know WHERE the support files are.  Links?
Thanks in advance,